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Other Lipid Disorders

Genetic testing can be important in screening, diagnosis, and potentially in treatment of lipid disorders, particularly for familial hypercholesterolemia (FH), familial chylomicronemia syndrome (FCS) and sitosterolemia. FCSNext: Familial chylomicronemia syndrome is a rare genetic disease characterized by the build up of chylomicrons (chylomicronemia), the largest lipoprotein particle, which are responsible for transporting dietary fat and cholesterol. FCS occurs in approximately 1 in 1,000,000 individuals worldwide and is characterized by recurrent pancreatitis and severe hypertryglyceridemia (leading to eruptive xanthomas and lactescence of the plasma). Due to the rarity of the condition, the clinical progression of FCS is not well understood.  FCS may also be underdiagnosed, as high levels of triglycerides may be attributed to other causes before a proper diagnosis is made.  Most cases present in in childhood or adolescence; however, patients can present in adulthood.  FCS is inherited in an autosomal recessive manner. The FCSNext test is a 5 gene panel that analyzes genes most commonly associated with FCS. The test can be an effective way of identifying at-risk individuals or confirming a diagnosis. This allows for better individualized disease management and treatment decisions. Sitosterolemia: Sitosterolemia is a rare autosomal recessively inherited lipid metabolic disorder that can lead to an increased risk of coronary artery disease and heart attack. Sitosterolemia occurs in approximately 1 in 50,000 individuals worldwide. Sitosterolemia patients develop hypercholesterolemia, tendon and tuberous xanthomas, premature development of atherosclerosis, and abnormal hematologic and liver function test results. The majority of patients are diagnosed in childhood. Our sitosterolemia test is a 2 gene panel that analyzes genes most commonly associated with sitosterolemia. The test can be an effective way of identifying at-risk individuals or confirming a diagnosis. This allows for better individualized disease management and treatment decisions.   There is also an option to choose from an 18 gene lipid menu to customize a test using our supplemental order form. This customizable form will give you the ability to test for the following rare lipid disorders: Familial HDL deficiency Lysosomal acid lipase deficiency LCAT deficiency/Fish-eye disease Hyperlipoproteinemia type III Cerebrotendinous xanthomastosis (CTX) Apolipoprotein C-III deficiency

Genetic testing can be important in screening, diagnosis, and potentially in treatment of lipid disorders, particularly for familial hypercholesterolemia (FH), familial chylomicronemia syndrome (FCS) and sitosterolemia. FCSNext: Familial chylomicronemia syndrome is a rare genetic disease characterized by the build up of chylomicrons (chylomicronemia), the largest lipoprotein particle, which are responsible for transporting dietary fat and cholesterol. FCS occurs in approximately 1 in 1,000,000 individuals worldwide and is characterized by recurrent pancreatitis and severe hypertryglyceridemia (leading to eruptive xanthomas and lactescence of the plasma). Due to the rarity of the condition, the clinical progression of FCS is not well understood.  FCS may also be underdiagnosed, as high levels of triglycerides may be attributed to other causes before a proper diagnosis is made.  Most cases present in in childhood or adolescence; however, patients can present in adulthood.  FCS is inherited in an autosomal recessive manner. The FCSNext test is a 5 gene panel that analyzes genes most commonly associated with FCS. The test can be an effective way of identifying at-risk individuals or confirming a diagnosis. This allows for better individualized disease management and treatment decisions. Sitosterolemia: Sitosterolemia is a rare autosomal recessively inherited lipid metabolic disorder that can lead to an increased risk of coronary artery disease and heart attack. Sitosterolemia occurs in approximately 1 in 50,000 individuals worldwide. Sitosterolemia patients develop hypercholesterolemia, tendon and tuberous xanthomas, premature development of atherosclerosis, and abnormal hematologic and liver function test results. The majority of patients are diagnosed in childhood. Our sitosterolemia test is a 2 gene panel that analyzes genes most commonly associated with sitosterolemia. The test can be an effective way of identifying at-risk individuals or confirming a diagnosis. This allows for better individualized disease management and treatment decisions.   There is also an option to choose from an 18 gene lipid menu to customize a test using our supplemental order form. This customizable form will give you the ability to test for the following rare lipid disorders: Familial HDL deficiency Lysosomal acid lipase deficiency LCAT deficiency/Fish-eye disease Hyperlipoproteinemia type III Cerebrotendinous xanthomastosis (CTX) Apolipoprotein C-III deficiency

The FCSNext is a comprehensive analysis of 5 genes associated with Familial Chylomicronemia. The Sitosterolemia test is a comprehensive analysis of 2 genes associated with sitosterolemia. Genomic deoxyribonucleic acid (gDNA) is isolated from the patient’s specimen using a standardized methodology and quantified. Sequence enrichment of the targeted coding exons and adjacent intronic nucleotides is carried out by a bait-capture methodology using long biotinylated oligonucleotide probes, and is followed by polymerase chain reaction (PCR) and Next-Generation sequencing. Additional Sanger sequencing is performed for any regions missing or with insufficient read depth coverage for reliable heterozygous variant detection. Potentially homozygous variants, variants in regions complicated by pseudogene interference, and variant calls not satisfying depth of coverage and variant allele frequency quality thresholds are verified by Sanger sequencing. This assay targets all coding domains, and well into the flanking 5’ and 3’ ends of all the introns and untranslated regions. Gross deletion/duplication analysis is performed for all genes using a custom pipeline based on read-depth from NGS data followed by a confirmatory orthogonal method, as needed. Exon-level resolution may not be achieved for every gene.

1.Stroes E et al. Diagnostic algorithm familial chylomicronemia syndrome.  Atheroscler Suppl. 2017 Jan;23:1-7. doi: 10.1016/j.atherosclerosissup.2016.10.002. Epub 2016 Dec 18.

Genes analyzed
Code
Test Name
Turnaround
Genes
8680
FHNext®
14-21 days
4 Genes
9520
CustomNext-Cardio®
14-21 days
167 Genes
8930
Sitosterolemia
14-21 days
2 Genes
8920
FCSNext™
14-21 days
5 Genes
FHNext®
4 Genes
APOB
LDLR
LDLRAP1
PCSK9
CustomNext-Cardio®
167 Genes
ABCA1
ABCC9
ABCG5
ABCG8
ACTA2
ACTC1
ACTN2
ACVRL1
AKAP9
ALMS1
ALPK3
ANK2
ANKRD1
APOA1
APOA5
APOB
APOC2
APOC3
APOE
BAG3
BGN
BRAF
CACNA1C
CACNA2D1
CACNB2
CALM1
CALM2
CALM3
CASQ2
CAV3
CBL
CBS
CHST14
COL1A1
COL1A2
COL3A1
COL5A1
COL5A2
CRYAB
CSRP3
CYP27A1
DES
DMD
DOLK
DSC2
DSG2
DSP
EFEMP2
EMD
ENG
EPHB4
EYA4
FBN1
FBN2
FHL1
FKBP14
FKRP
FKTN
FLNA
FLNC
FOXE3
GAA
GATA4
GATAD1
GDF2
GLA
GPD1L
GPIHBP1
HCN4
HRAS
JAG1
JPH2
JUP
KCND3
KCNE1
KCNE2
KCNE3
KCNH2
KCNJ2
KCNJ5
KCNJ8
KCNQ1
KRAS
LAMA4
LAMP2
LCAT
LDB3
LDLR
LDLRAP1
LIPA
LMF1
LMNA
LOX
LPL
LZTR1
MAP2K1
MAP2K2
MAT2A
MED12
MFAP5
MYBPC3
MYH11
MYH6
MYH7
MYL2
MYL3
MYLK
MYOZ2
MYPN
NEXN
NF1
NKX2-5
NOTCH1
NRAS
PCSK9
PKP2
PLN
PLOD1
PPP1CB
PRDM5
PRKAG2
PRKG1
PTPN11
RAF1
RASA1
RBM20
RIT1
RYR2
SCN10A
SCN1B
SCN2B
SCN3B
SCN4B
SCN5A
SHOC2
SKI
SLC2A10
SLCO1B1
SMAD3
SMAD4
SNTA1
SOS1
SOS2
SPRED1
TAZ
TBX1
TBX20
TBX5
TCAP
TECRL
TGFB2
TGFB3
TGFBR1
TGFBR2
TMEM43
TNNC1
TNNI3
TNNT2
TNXB
TPM1
TRDN
TRPM4
TTN
TTR
TXNRD2
VCL
ZNF469
Sitosterolemia
2 Genes
ABCG5
ABCG8
FCSNext™
5 Genes
APOA5
APOC2
GPIHBP1
LMF1
LPL
Test Requisition Form
Private: Cardiovascular
Supplemental Form
CustomNext-Cardio®
Consent
Private: Cardiovascular Genetics
Product Summary
FHNext
White Papers and Case Studies
Private: Cardiomyopathy and Arrhythmia Panels Cardiology
Why Is This Important?

Knowing if your patient has a lipid disorder can help you determine their future coronary artery disease risk and guide your medical management recommendations. Key benefits include:

  1. Confirm a diagnosis, particularly when clinical criteria are unclear or borderline in an individual
  2. Help tailor medical treatment
  3. Clarify risks to family members, including the inheritance pattern
When To Consider Testing
  • Genetic testing for FCS is recommended when patient has:1
    • TG/TC ratio > 5 mg/dL
    • History of pancreatitis
    • Symptoms < 40y
  • Genetic testing for sitosterolemia is recommended when patient exhibits these symptoms:
    • Tendon and tuberous xanthomas (build-up of yellowish cholesterol rich material over joints)
    • Hemolysis (destruction of red blood cells) and platelet abnormalities
    • Early coronary atherosclerosis due to plaque and fat build up
    • Some patients have high cholesterol with no family history of it
Mutation Distribution and Detection Rates
>99%
FCSNext and sitosterolemia tests
are designed and validated to be capable of detecting the described mutations in the genes represented on the tests (analytical sensitivity). The clinical sensitivity of the FCSNext and sitosterolemia test may vary widely according to the specific clinical and family history.*

Test Description

The FCSNext is a comprehensive analysis of 5 genes associated with Familial Chylomicronemia. The Sitosterolemia test is a comprehensive analysis of 2 genes associated with sitosterolemia. Genomic deoxyribonucleic acid (gDNA) is isolated from the patient’s specimen using a standardized methodology and quantified. Sequence enrichment of the targeted coding exons and adjacent intronic nucleotides is carried out by a bait-capture methodology using long biotinylated oligonucleotide probes, and is followed by polymerase chain reaction (PCR) and Next-Generation sequencing. Additional Sanger sequencing is performed for any regions missing or with insufficient read depth coverage for reliable heterozygous variant detection. Potentially homozygous variants, variants in regions complicated by pseudogene interference, and variant calls not satisfying depth of coverage and variant allele frequency quality thresholds are verified by Sanger sequencing. This assay targets all coding domains, and well into the flanking 5’ and 3’ ends of all the introns and untranslated regions. Gross deletion/duplication analysis is performed using a custom pipeline based on read-depth from NGS data followed by a confirmatory orthogonal method, as needed. Exon-level resolution may not be achieved for every gene.

1.Stroes E et al. Diagnostic algorithm familial chylomicronemia syndrome.  Atheroscler Suppl. 2017 Jan;23:1-7. doi: 10.1016/j.atherosclerosissup.2016.10.002. Epub 2016 Dec 18.